Output directory to check

Important function to remove the boundary box values from these calculations

## Catch time series plots: : 29.45 sec elapsed
## Proportion of caught biomass per age class plots: : 28.47 sec elapsed
## Proportion of caught individuals plots: : 27.25 sec elapsed

Catch timeseries

Transient killer whales

Toothed whales

Resident killer whales

Dolphins

Gray whales

Humpback whales

Other baleen whales

Steller sea lion

Other pinnipeds

Seabirds diving fish

Seabirds diving plankton

Seabirds surface fish

Seabirds surface plankton

Sleeper shark

Salmon shark

Dogfish

Walleye pollock

Pacific cod

Pacific herring

Arrowtooth flounder

Pacific halibut

Flathead sole

Rex sole

Shallow-water flatfish

Deep-water flatfish

Longnose skate

Big skate

Other skate

Sablefish

Pacific Ocean Perch

Rockfish - slope assemblage

Rockfish - pelagic shelf assemblage

Rockfish - demersal shelf

Thornyhead

Shallow demersal fish

Deep demersal fish

Large sculpins

Salmon chinook

Salmon chum

Salmon coho

Salmon pink

Salmon sockeye

Pacific hake

Capelin

Sandlance

Forage fish - slope

Eulachon

Fraction of catch per age class - biomass

Vertical dashed line indicates when catch.ts kicks in. Panel labeled ‘input’ with one bar shows the proportion of catch as specified in the parameter CatchTS_agedistribXXX1 in harvest.prm.

Transient killer whales

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Toothed whales

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Resident killer whales

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Dolphins

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Gray whales

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Humpback whales

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Other baleen whales

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Steller sea lion

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Other pinnipeds

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Seabirds diving fish

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Seabirds diving plankton

## Warning: Removed 250 rows containing missing values (`position_stack()`).

Seabirds surface fish

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Seabirds surface plankton

## Warning: Removed 310 rows containing missing values (`position_stack()`).

Sleeper shark

Salmon shark

## Warning: Removed 10 rows containing missing values (`position_stack()`).

Dogfish

## Warning: Removed 90 rows containing missing values (`position_stack()`).

Walleye pollock

Pacific cod

Pacific herring

## Warning: Removed 250 rows containing missing values (`position_stack()`).

Arrowtooth flounder

Pacific halibut

Flathead sole

Rex sole

Shallow-water flatfish

Deep-water flatfish

Longnose skate

Big skate

Other skate

Sablefish

Pacific Ocean Perch

Rockfish - slope assemblage

Rockfish - pelagic shelf assemblage

Rockfish - demersal shelf

Thornyhead

Shallow demersal fish

Deep demersal fish

Large sculpins

Salmon chinook

## Warning: Removed 3 rows containing missing values (`position_stack()`).

Salmon chum

## Warning: Removed 5 rows containing missing values (`position_stack()`).

Salmon coho

## Warning: Removed 7 rows containing missing values (`position_stack()`).

Salmon pink

## Warning: Removed 70 rows containing missing values (`position_stack()`).

Salmon sockeye

## Warning: Removed 3 rows containing missing values (`position_stack()`).

Pacific hake

Capelin

## Warning: Removed 65 rows containing missing values (`position_stack()`).

Sandlance

## Warning: Removed 5 rows containing missing values (`position_stack()`).

Forage fish - slope

## Warning: Removed 87 rows containing missing values (`position_stack()`).

Eulachon

## Warning: Removed 65 rows containing missing values (`position_stack()`).

Proportion of caught individuals by age class - numbers

Panels represent simulation years. Last year not shown.

Transient killer whales

Toothed whales

Resident killer whales

Dolphins

Gray whales

## Warning: Removed 10 rows containing missing values (`geom_line()`).

Humpback whales

## Warning: Removed 10 rows containing missing values (`geom_line()`).

Other baleen whales

Steller sea lion

Other pinnipeds

Seabirds diving fish

Seabirds diving plankton

Seabirds surface fish

Seabirds surface plankton

Sleeper shark

Salmon shark

Dogfish

Walleye pollock

Pacific cod

Pacific herring

Arrowtooth flounder

Pacific halibut

Flathead sole

Rex sole

Shallow-water flatfish

Deep-water flatfish

Longnose skate

Big skate

Other skate

## Warning: Removed 1 row containing missing values (`geom_line()`).

Sablefish

Pacific Ocean Perch

Rockfish - slope assemblage

Rockfish - pelagic shelf assemblage

Rockfish - demersal shelf

Thornyhead

Shallow demersal fish

Deep demersal fish

Large sculpins

Salmon chinook

## Warning: Removed 7 rows containing missing values (`geom_line()`).

Salmon chum

## Warning: Removed 5 rows containing missing values (`geom_line()`).

Salmon coho

## Warning: Removed 13 rows containing missing values (`geom_line()`).

Salmon pink

## Warning: Removed 2 rows containing missing values (`geom_line()`).

Salmon sockeye

## Warning: Removed 7 rows containing missing values (`geom_line()`).

Pacific hake

## Warning: Removed 48 rows containing missing values (`geom_line()`).

Capelin

Sandlance

Forage fish - slope

Eulachon